Jmol分子表示(Cas9,Cpf1) | CRISPR-Cas9情報 | CRISPR-Cpf1情報 | ニュース
ゲノム編集研究でEmmanuelle CharpentierとJennifer A. Doudnaが2020年ノーベル化学賞を受賞しました! → 関連記事 「生物の科学 遺伝」2018年11月発刊号に特集『ゲノム編集』が掲載されました。 → PDF版販売 ゲノム編集研究が日本国際賞を受賞(2017/02/03公表): 2017年(第33回)Japan Prize受賞者 「生命科学」分野 CRISPR-Casによるゲノム編集機構の解明(国際科学技術財団) → #ゲノム編集。CRISPR。ゲノム編集研究が日本国際賞受賞 - Togetterまとめ 本ページについて日本コンピュータ化学会2016春季年会(2016/06/02-03,東京工業大学大岡山キャンパス;プログラム)でポスター発表しました → 1P09要旨 [PDF] |
■CRISPR-Cas9(Cas9以外のCasも含む)
Chain B(5b2r・5b2s・5b2t,5fw1・5fw2・5fw3ではChain A) …guide RNA
Chain C …target DNA
Chain D …non-target DNA
■CRISPR-Cpf1
※Jmolによる分子表示はWindows 10でもInternet Explorer 11により可能です。
●アミノ色表示の凡例
ASP GLU CYS MET LYS ARG SER THR PHE TYR ASN GLN GLY LEU VAL ILE ALA TRP HIS PRO
●酸性・中性〈芳香族〉・塩基性アミノ酸区別表示の凡例
ASP GLU GLY ALA VAL LEU ILE CYS SER THR ASN GLN PRO MET PHE TYR TRP LYS ARG HIS
●極性〈酸性・塩基性〉・非極性(疎水性)アミノ酸区別
SER THR TYR CYS ASN GLN ASP GLU LYS ARG HIS GLY ALA VAL LEU ILE PHE PRO MET TRP
●疎水性インデックス順
ARG LYS ASN ASP GLN GLU HIS PRO TYR TRP SER THR GLY ALA MET CYS PHE LEU VAL ILE
●有機概念図I/O値順(特性基 R)
ASN SER ASP GLN GLU THR ARG HIS GLY LYS TYR TRP CYS MET PRO PHE ALA VAL LEU ILE
●等電点順
ASP GLU CYS ASN PHE GLN TYR SER MET TRP VAL GLY LEU ALA ILE THR PRO HIS LYS ARG
アミノ酸および特性基の親水性・疎水性 | Log Pをポケットに!
Cas9タンパク質4ogcとそのPDBsumデータ(Science論文(2014);2020年ノーベル化学賞受賞のJ.A.Doudnaらによる)
[左]5f9r(2020年ノーベル化学賞受賞のJ.A.Doudnaらによる) [右]4oo8のChain A-C
;・
[左]4qyz(空間充填がcrRNA,小さめの球表示が標的ssDNA) [中]5h9f [右]5h9fと同データ引用Nature論文掲載図との比較
左から 4un3(空間充填が標的DNA,小さめの球表示がsgRNA),同3Dプリンタ模型(3dmoleculardesigns.com),
同データをより作成した画像が表紙の「生物の科学 遺伝」2018年11月発刊号(2021年発刊号 p.8にも掲載),The Mercury News記事(2018/09/10)
[左]5b2q
[右]同Chain B-D(sgRNA-標的DNAのみ;スティック表示がRNAで球棒表示がDNA〈塩基部分だけドット表面表示〉) …クリックで拡大
5b2r
※recognition lobe (REC),nuclease lobe (NUC)についてはCas9 - Wikipedia,Cell資料(2014/06/05) [PDF]ほか参照
[左]抗CRISPRタンパク質AcrIIA4が結合したSpyCas9-sgRNA複合体5xbl …Nature ハイライト(2017/06/15)参照
[右]抗CRISPRタンパク質AcrID1が結合したCas10dタンパク質6thh → Jmolトピック
Cas12f-gRNA-標的DNA複合体 7c7l
TnpBタンパク質(Cas12ファミリー)-ωRNA-標的DNA複合体8h1j
Cas13bt3(Cas13X.1)タンパク質-crRNA-標的DNA複合体 7vtn
CasX-gRNA-DNA複合体 6e79
【参考】Cas9タンパク質のアミノ酸配列比較(FASTA形式データから作成);4oo8(B鎖)と5f9r(A鎖,2020年ノーベル化学賞受賞のJ.A.Doudnaらによる) ↓ 後者を4つ後ろに動かすと…
001-050 4oo8
Gly
Ser
Gly
His
Met
Asp
Lys
Lys
Tyr
Ser
Ile
Gly
Leu
Ala
Ile
Gly
Thr
Asn
Ser
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Gly
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Ile
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Ser
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Lys
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Lys
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Leu
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Asn
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Arg
His
Ser
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Lys
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Asp
Lys
Lys
Tyr
Ser
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Leu
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051-100 4oo8
Leu
Ile
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Ser
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Met
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Asp
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101-150 4oo8
Phe
Phe
His
Arg
Leu
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151-200 4oo8
Asp
Lys
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201-250 4oo8
Glu
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251-300 4oo8
Gly
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301-350 4oo8
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351-400 4oo8
Tyr
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401-450 4oo8
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451-500 4oo8
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501-550 4oo8
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551-600 4oo8
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601-650 4oo8
Leu
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651-700 4oo8
Val
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701-750 4oo8
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751-800 4oo8
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801-850 4oo8
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851-900 4oo8
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Asn
Leu
901-950 4oo8
Phe
Asp
Asn
Leu
Thr
Lys
Ala
Glu
Arg
Gly
Gly
Leu
Ser
Glu
Leu
Asp
Lys
Ala
Gly
Phe
Ile
Lys
Arg
Gln
Leu
Val
Glu
Thr
Arg
Gln
Ile
Thr
Lys
His
Val
Ala
Gln
Ile
Leu
Asp
Ser
Arg
Met
Asn
Thr
Lys
Tyr
Asp
Glu
Asn
5f9r
Thr
Lys
Ala
Glu
Arg
Gly
Gly
Leu
Ser
Glu
Leu
Asp
Lys
Ala
Gly
Phe
Ile
Lys
Arg
Gln
Leu
Val
Glu
Thr
Arg
Gln
Ile
Thr
Lys
His
Val
Ala
Gln
Ile
Leu
Asp
Ser
Arg
Met
Asn
Thr
Lys
Tyr
Asp
Glu
Asn
Asp
Lys
Leu
Ile
951-1000 4oo8
Asp
Lys
Leu
Ile
Arg
Glu
Val
Lys
Val
Ile
Thr
Leu
Lys
Ser
Lys
Leu
Val
Ser
Asp
Phe
Arg
Lys
Asp
Phe
Gln
Phe
Tyr
Lys
Val
Arg
Glu
Ile
Asn
Asn
Tyr
His
His
Ala
His
Asp
Ala
Tyr
Leu
Asn
Ala
Val
Val
Gly
Thr
Ala
5f9r
Arg
Glu
Val
Lys
Val
Ile
Thr
Leu
Lys
Ser
Lys
Leu
Val
Ser
Asp
Phe
Arg
Lys
Asp
Phe
Gln
Phe
Tyr
Lys
Val
Arg
Glu
Ile
Asn
Asn
Tyr
His
His
Ala
His
Asp
Ala
Tyr
Leu
Asn
Ala
Val
Val
Gly
Thr
Ala
Leu
Ile
Lys
Lys
1001-1050 4oo8
Leu
Ile
Lys
Lys
Tyr
Pro
Lys
Leu
Glu
Ser
Glu
Phe
Val
Tyr
Gly
Asp
Tyr
Lys
Val
Tyr
Asp
Val
Arg
Lys
Met
Ile
Ala
Lys
Ser
Glu
Gln
Glu
Ile
Gly
Lys
Ala
Thr
Ala
Lys
Tyr
Phe
Phe
Tyr
Ser
Asn
Ile
Met
Asn
Phe
Phe
5f9r
Tyr
Pro
Lys
Leu
Glu
Ser
Glu
Phe
Val
Tyr
Gly
Asp
Tyr
Lys
Val
Tyr
Asp
Val
Arg
Lys
Met
Ile
Ala
Lys
Ser
Glu
Gln
Glu
Ile
Gly
Lys
Ala
Thr
Ala
Lys
Tyr
Phe
Phe
Tyr
Ser
Asn
Ile
Met
Asn
Phe
Phe
Lys
Thr
Glu
Ile
1051-1100 4oo8
Lys
Thr
Glu
Ile
Thr
Leu
Ala
Asn
Gly
Glu
Ile
Arg
Lys
Arg
Pro
Leu
Ile
Glu
Thr
Asn
Gly
Glu
Thr
Gly
Glu
Ile
Val
Trp
Asp
Lys
Gly
Arg
Asp
Phe
Ala
Thr
Val
Arg
Lys
Val
Leu
Ser
Met
Pro
Gln
Val
Asn
Ile
Val
Lys
5f9r
Thr
Leu
Ala
Asn
Gly
Glu
Ile
Arg
Lys
Arg
Pro
Leu
Ile
Glu
Thr
Asn
Gly
Glu
Thr
Gly
Glu
Ile
Val
Trp
Asp
Lys
Gly
Arg
Asp
Phe
Ala
Thr
Val
Arg
Lys
Val
Leu
Ser
Met
Pro
Gln
Val
Asn
Ile
Val
Lys
Lys
Thr
Glu
Val
1101-1150 4oo8
Lys
Thr
Glu
Val
Gln
Thr
Gly
Gly
Phe
Ser
Lys
Glu
Ser
Ile
Leu
Pro
Lys
Arg
Asn
Ser
Asp
Lys
Leu
Ile
Ala
Arg
Lys
Lys
Asp
Trp
Asp
Pro
Lys
Lys
Tyr
Gly
Gly
Phe
Asp
Ser
Pro
Thr
Val
Ala
Tyr
Ser
Val
Leu
Val
Val
5f9r
Gln
Thr
Gly
Gly
Phe
Ser
Lys
Glu
Ser
Ile
Leu
Pro
Lys
Arg
Asn
Ser
Asp
Lys
Leu
Ile
Ala
Arg
Lys
Lys
Asp
Trp
Asp
Pro
Lys
Lys
Tyr
Gly
Gly
Phe
Asp
Ser
Pro
Thr
Val
Ala
Tyr
Ser
Val
Leu
Val
Val
Ala
Lys
Val
Glu
1151-1200 4oo8
Ala
Lys
Val
Glu
Lys
Gly
Lys
Ser
Lys
Lys
Leu
Lys
Ser
Val
Lys
Glu
Leu
Leu
Gly
Ile
Thr
Ile
Met
Glu
Arg
Ser
Ser
Phe
Glu
Lys
Asn
Pro
Ile
Asp
Phe
Leu
Glu
Ala
Lys
Gly
Tyr
Lys
Glu
Val
Lys
Lys
Asp
Leu
Ile
Ile
5f9r
Lys
Gly
Lys
Ser
Lys
Lys
Leu
Lys
Ser
Val
Lys
Glu
Leu
Leu
Gly
Ile
Thr
Ile
Met
Glu
Arg
Ser
Ser
Phe
Glu
Lys
Asn
Pro
Ile
Asp
Phe
Leu
Glu
Ala
Lys
Gly
Tyr
Lys
Glu
Val
Lys
Lys
Asp
Leu
Ile
Ile
Lys
Leu
Pro
Lys
1201-1250 4oo8
Lys
Leu
Pro
Lys
Tyr
Ser
Leu
Phe
Glu
Leu
Glu
Asn
Gly
Arg
Lys
Arg
Met
Leu
Ala
Ser
Ala
Gly
Glu
Leu
Gln
Lys
Gly
Asn
Glu
Leu
Ala
Leu
Pro
Ser
Lys
Tyr
Val
Asn
Phe
Leu
Tyr
Leu
Ala
Ser
His
Tyr
Glu
Lys
Leu
Lys
5f9r
Tyr
Ser
Leu
Phe
Glu
Leu
Glu
Asn
Gly
Arg
Lys
Arg
Met
Leu
Ala
Ser
Ala
Gly
Glu
Leu
Gln
Lys
Gly
Asn
Glu
Leu
Ala
Leu
Pro
Ser
Lys
Tyr
Val
Asn
Phe
Leu
Tyr
Leu
Ala
Ser
His
Tyr
Glu
Lys
Leu
Lys
Gly
Ser
Pro
Glu
1251-1300 4oo8
Gly
Ser
Pro
Glu
Asp
Asn
Glu
Gln
Lys
Gln
Leu
Phe
Val
Glu
Gln
His
Lys
His
Tyr
Leu
Asp
Glu
Ile
Ile
Glu
Gln
Ile
Ser
Glu
Phe
Ser
Lys
Arg
Val
Ile
Leu
Ala
Asp
Ala
Asn
Leu
Asp
Lys
Val
Leu
Ser
Ala
Tyr
Asn
Lys
5f9r
Asp
Asn
Glu
Gln
Lys
Gln
Leu
Phe
Val
Glu
Gln
His
Lys
His
Tyr
Leu
Asp
Glu
Ile
Ile
Glu
Gln
Ile
Ser
Glu
Phe
Ser
Lys
Arg
Val
Ile
Leu
Ala
Asp
Ala
Asn
Leu
Asp
Lys
Val
Leu
Ser
Ala
Tyr
Asn
Lys
His
Arg
Asp
Lys
1301-1350 4oo8
His
Arg
Asp
Lys
Pro
Ile
Arg
Glu
Gln
Ala
Glu
Asn
Ile
Ile
His
Leu
Phe
Thr
Leu
Thr
Asn
Leu
Gly
Ala
Pro
Ala
Ala
Phe
Lys
Tyr
Phe
Asp
Thr
Thr
Ile
Asp
Arg
Lys
Arg
Tyr
Thr
Ser
Thr
Lys
Glu
Val
Leu
Asp
Ala
Thr
5f9r
Pro
Ile
Arg
Glu
Gln
Ala
Glu
Asn
Ile
Ile
His
Leu
Phe
Thr
Leu
Thr
Asn
Leu
Gly
Ala
Pro
Ala
Ala
Phe
Lys
Tyr
Phe
Asp
Thr
Thr
Ile
Asp
Arg
Lys
Arg
Tyr
Thr
Ser
Thr
Lys
Glu
Val
Leu
Asp
Ala
Thr
Leu
Ile
His
Gln
1351- 4oo8
Leu
Ile
His
Gln
Ser
Ile
Thr
Gly
Leu
Tyr
Glu
Thr
Arg
Ile
Asp
Leu
Ser
Gln
Leu
Gly
Gly
Asp
5f9r
Ser
Ile
Thr
Gly
Leu
Tyr
Glu
Thr
Arg
Ile
Asp
Leu
Ser
Gln
Leu
Gly
Gly
Asp
Cas9タンパク質のアミノ酸配列比較;4oo8(B鎖)と5f9r(A鎖;配列を4つ後ろに移動,2020年ノーベル化学賞受賞のJ.A.Doudnaらによる)
001-050 4oo8
Gly
Ser
Gly
His
Met
Asp
Lys
Lys
Tyr
Ser
Ile
Gly
Leu
Ala
Ile
Gly
Thr
Asn
Ser
Val
Gly
Trp
Ala
Val
Ile
Thr
Asp
Glu
Tyr
Lys
Val
Pro
Ser
Lys
Lys
Phe
Lys
Val
Leu
Gly
Asn
Thr
Asp
Arg
His
Ser
Ile
Lys
Lys
Asn
5f9r
→
→
→
→
Met
Asp
Lys
Lys
Tyr
Ser
Ile
Gly
Leu
Asp
Ile
Gly
Thr
Asn
Ser
Val
Gly
Trp
Ala
Val
Ile
Thr
Asp
Glu
Tyr
Lys
Val
Pro
Ser
Lys
Lys
Phe
Lys
Val
Leu
Gly
Asn
Thr
Asp
Arg
His
Ser
Ile
Lys
Lys
Asn
051-100 4oo8
Leu
Ile
Gly
Ala
Leu
Leu
Phe
Asp
Ser
Gly
Glu
Thr
Ala
Glu
Ala
Thr
Arg
Leu
Lys
Arg
Thr
Ala
Arg
Arg
Arg
Tyr
Thr
Arg
Arg
Lys
Asn
Arg
Ile
Leu
Tyr
Leu
Gln
Glu
Ile
Phe
Ser
Asn
Glu
Met
Ala
Lys
Val
Asp
Asp
Ser
5f9r
Leu
Ile
Gly
Ala
Leu
Leu
Phe
Asp
Ser
Gly
Glu
Thr
Ala
Glu
Ala
Thr
Arg
Leu
Lys
Arg
Thr
Ala
Arg
Arg
Arg
Tyr
Thr
Arg
Arg
Lys
Asn
Arg
Ile
Cys
Tyr
Leu
Gln
Glu
Ile
Phe
Ser
Asn
Glu
Met
Ala
Lys
Val
Asp
Asp
Ser
101-150 4oo8
Phe
Phe
His
Arg
Leu
Glu
Glu
Ser
Phe
Leu
Val
Glu
Glu
Asp
Lys
Lys
His
Glu
Arg
His
Pro
Ile
Phe
Gly
Asn
Ile
Val
Asp
Glu
Val
Ala
Tyr
His
Glu
Lys
Tyr
Pro
Thr
Ile
Tyr
His
Leu
Arg
Lys
Lys
Leu
Val
Asp
Ser
Thr
5f9r
Phe
Phe
His
Arg
Leu
Glu
Glu
Ser
Phe
Leu
Val
Glu
Glu
Asp
Lys
Lys
His
Glu
Arg
His
Pro
Ile
Phe
Gly
Asn
Ile
Val
Asp
Glu
Val
Ala
Tyr
His
Glu
Lys
Tyr
Pro
Thr
Ile
Tyr
His
Leu
Arg
Lys
Lys
Leu
Val
Asp
Ser
Thr
151-200 4oo8
Asp
Lys
Ala
Asp
Leu
Arg
Leu
Ile
Tyr
Leu
Ala
Leu
Ala
His
Met
Ile
Lys
Phe
Arg
Gly
His
Phe
Leu
Ile
Glu
Gly
Asp
Leu
Asn
Pro
Asp
Asn
Ser
Asp
Val
Asp
Lys
Leu
Phe
Ile
Gln
Leu
Val
Gln
Thr
Tyr
Asn
Gln
Leu
Phe
5f9r
Leu
Arg
Leu
Ile
Tyr
Leu
Ala
Leu
Ala
His
Met
Ile
Lys
Phe
Arg
Gly
His
Phe
Leu
Ile
Glu
Gly
Asp
Leu
Asn
Pro
Asp
Asn
Ser
Asp
Val
Asp
Lys
Leu
Phe
Ile
Gln
Leu
Val
Gln
Thr
Tyr
Asn
Gln
Leu
Phe
Glu
Glu
Asn
Pro
201-250 4oo8
Glu
Glu
Asn
Pro
Ile
Asn
Ala
Ser
Gly
Val
Asp
Ala
Lys
Ala
Ile
Leu
Ser
Ala
Arg
Leu
Ser
Lys
Ser
Arg
Arg
Leu
Glu
Asn
Leu
Ile
Ala
Gln
Leu
Pro
Gly
Glu
Lys
Lys
Asn
Gly
Leu
Phe
Gly
Asn
Leu
Ile
Ala
Leu
Ser
Leu
5f9r
Asp
Lys
Ala
Asp
Ile
Asn
Ala
Ser
Gly
Val
Asp
Ala
Lys
Ala
Ile
Leu
Ser
Ala
Arg
Leu
Ser
Lys
Ser
Arg
Arg
Leu
Glu
Asn
Leu
Ile
Ala
Gln
Leu
Pro
Gly
Glu
Lys
Lys
Asn
Gly
Leu
Phe
Gly
Asn
Leu
Ile
Ala
Leu
Ser
Leu
251-300 4oo8
Gly
Leu
Thr
Pro
Asn
Phe
Lys
Ser
Asn
Phe
Asp
Leu
Ala
Glu
Asp
Ala
Lys
Leu
Gln
Leu
Ser
Lys
Asp
Thr
Tyr
Asp
Asp
Asp
Leu
Asp
Asn
Leu
Leu
Ala
Gln
Ile
Gly
Asp
Gln
Tyr
Ala
Asp
Leu
Phe
Leu
Ala
Ala
Lys
Asn
Leu
5f9r
Gly
Leu
Thr
Pro
Asn
Phe
Lys
Ser
Asn
Phe
Asp
Leu
Ala
Glu
Asp
Ala
Lys
Leu
Gln
Leu
Ser
Lys
Asp
Thr
Tyr
Asp
Asp
Asp
Leu
Asp
Asn
Leu
Leu
Ala
Gln
Ile
Gly
Asp
Gln
Tyr
Ala
Asp
Leu
Phe
Leu
Ala
Ala
Lys
Asn
Leu
301-350 4oo8
Ser
Asp
Ala
Ile
Leu
Leu
Ser
Asp
Ile
Leu
Arg
Val
Asn
Thr
Glu
Ile
Thr
Lys
Ala
Pro
Leu
Ser
Ala
Ser
Met
Ile
Lys
Arg
Tyr
Asp
Glu
His
His
Gln
Asp
Leu
Thr
Leu
Leu
Lys
Ala
Leu
Val
Arg
Gln
Gln
Leu
Pro
Glu
Lys
5f9r
Ser
Asp
Ala
Ile
Leu
Leu
Ser
Asp
Ile
Leu
Arg
Val
Asn
Thr
Glu
Ile
Thr
Lys
Ala
Pro
Leu
Ser
Ala
Ser
Met
Ile
Lys
Arg
Tyr
Asp
Glu
His
His
Gln
Asp
Leu
Thr
Leu
Leu
Lys
Ala
Leu
Val
Arg
Gln
Gln
Leu
Pro
Glu
Lys
351-400 4oo8
Tyr
Lys
Glu
Ile
Phe
Phe
Asp
Gln
Ser
Lys
Asn
Gly
Tyr
Ala
Gly
Tyr
Ile
Asp
Gly
Gly
Ala
Ser
Gln
Glu
Glu
Phe
Tyr
Lys
Phe
Ile
Lys
Pro
Ile
Leu
Glu
Lys
Met
Asp
Gly
Thr
Glu
Glu
Leu
Leu
Val
Lys
Leu
Asn
Arg
Glu
5f9r
Tyr
Lys
Glu
Ile
Phe
Phe
Asp
Gln
Ser
Lys
Asn
Gly
Tyr
Ala
Gly
Tyr
Ile
Asp
Gly
Gly
Ala
Ser
Gln
Glu
Glu
Phe
Tyr
Lys
Phe
Ile
Lys
Pro
Ile
Leu
Glu
Lys
Met
Asp
Gly
Thr
Glu
Glu
Leu
Leu
Val
Lys
Leu
Asn
Arg
Glu
401-450 4oo8
Asp
Leu
Leu
Arg
Lys
Gln
Arg
Thr
Phe
Asp
Asn
Gly
Ser
Ile
Pro
His
Gln
Ile
His
Leu
Gly
Glu
Leu
His
Ala
Ile
Leu
Arg
Arg
Gln
Glu
Asp
Phe
Tyr
Pro
Phe
Leu
Lys
Asp
Asn
Arg
Glu
Lys
Ile
Glu
Lys
Ile
Leu
Thr
Phe
5f9r
Asp
Leu
Leu
Arg
Lys
Gln
Arg
Thr
Phe
Asp
Asn
Gly
Ser
Ile
Pro
His
Gln
Ile
His
Leu
Gly
Glu
Leu
His
Ala
Ile
Leu
Arg
Arg
Gln
Glu
Asp
Phe
Tyr
Pro
Phe
Leu
Lys
Asp
Asn
Arg
Glu
Lys
Ile
Glu
Lys
Ile
Leu
Thr
Phe
451-500 4oo8
Arg
Ile
Pro
Tyr
Tyr
Val
Gly
Pro
Leu
Ala
Arg
Gly
Asn
Ser
Arg
Phe
Ala
Trp
Met
Thr
Arg
Lys
Ser
Glu
Glu
Thr
Ile
Thr
Pro
Trp
Asn
Phe
Glu
Glu
Val
Val
Asp
Lys
Gly
Ala
Ser
Ala
Gln
Ser
Phe
Ile
Glu
Arg
Met
Thr
5f9r
Arg
Ile
Pro
Tyr
Tyr
Val
Gly
Pro
Leu
Ala
Arg
Gly
Asn
Ser
Arg
Phe
Ala
Trp
Met
Thr
Arg
Lys
Ser
Glu
Glu
Thr
Ile
Thr
Pro
Trp
Asn
Phe
Glu
Glu
Val
Val
Asp
Lys
Gly
Ala
Ser
Ala
Gln
Ser
Phe
Ile
Glu
Arg
Met
Thr
501-550 4oo8
Asn
Phe
Asp
Lys
Asn
Leu
Pro
Asn
Glu
Lys
Val
Leu
Pro
Lys
His
Ser
Leu
Leu
Tyr
Glu
Tyr
Phe
Thr
Val
Tyr
Asn
Glu
Leu
Thr
Lys
Val
Lys
Tyr
Val
Thr
Glu
Gly
Met
Arg
Lys
Pro
Ala
Phe
Leu
Ser
Gly
Glu
Gln
Lys
Lys
5f9r
Asn
Phe
Asp
Lys
Asn
Leu
Pro
Asn
Glu
Lys
Val
Leu
Pro
Lys
His
Ser
Leu
Leu
Tyr
Glu
Tyr
Phe
Thr
Val
Tyr
Asn
Glu
Leu
Thr
Lys
Val
Lys
Tyr
Val
Thr
Glu
Gly
Met
Arg
Lys
Pro
Ala
Phe
Leu
Ser
Gly
Glu
Gln
Lys
Lys
551-600 4oo8
Ala
Ile
Val
Asp
Leu
Leu
Phe
Lys
Thr
Asn
Arg
Lys
Val
Thr
Val
Lys
Gln
Leu
Lys
Glu
Asp
Tyr
Phe
Lys
Lys
Ile
Glu
Glu
Phe
Asp
Ser
Val
Glu
Ile
Ser
Gly
Val
Glu
Asp
Arg
Phe
Asn
Ala
Ser
Leu
Gly
Thr
Tyr
His
Asp
5f9r
Ala
Ile
Val
Asp
Leu
Leu
Phe
Lys
Thr
Asn
Arg
Lys
Val
Thr
Val
Lys
Gln
Leu
Lys
Glu
Asp
Tyr
Phe
Lys
Lys
Ile
Glu
Cys
Phe
Asp
Ser
Val
Glu
Ile
Ser
Gly
Val
Glu
Asp
Arg
Phe
Asn
Ala
Ser
Leu
Gly
Thr
Tyr
His
Asp
601-650 4oo8
Leu
Leu
Lys
Ile
Ile
Lys
Asp
Lys
Asp
Phe
Leu
Asp
Asn
Glu
Glu
Asn
Glu
Asp
Ile
Leu
Glu
Asp
Ile
Val
Leu
Thr
Leu
Thr
Leu
Phe
Glu
Asp
Arg
Glu
Met
Ile
Glu
Glu
Arg
Leu
Lys
Thr
Tyr
Ala
His
Leu
Phe
Asp
Asp
Lys
5f9r
Leu
Leu
Lys
Ile
Ile
Lys
Asp
Lys
Asp
Phe
Leu
Asp
Asn
Glu
Glu
Asn
Glu
Asp
Ile
Leu
Glu
Asp
Ile
Val
Leu
Thr
Leu
Thr
Leu
Phe
Glu
Asp
Arg
Glu
Met
Ile
Glu
Glu
Arg
Leu
Lys
Thr
Tyr
Ala
His
Leu
Phe
Asp
Asp
Lys
651-700 4oo8
Val
Met
Lys
Gln
Leu
Lys
Arg
Arg
Arg
Tyr
Thr
Gly
Trp
Gly
Arg
Leu
Ser
Arg
Lys
Leu
Ile
Asn
Gly
Ile
Arg
Asp
Lys
Gln
Ser
Gly
Lys
Thr
Ile
Leu
Asp
Phe
Leu
Lys
Ser
Asp
Gly
Phe
Ala
Asn
Arg
Asn
Phe
Met
Gln
Leu
5f9r
Val
Met
Lys
Gln
Leu
Lys
Arg
Arg
Arg
Tyr
Thr
Gly
Trp
Gly
Arg
Leu
Ser
Arg
Lys
Leu
Ile
Asn
Gly
Ile
Arg
Asp
Lys
Gln
Ser
Gly
Lys
Thr
Ile
Leu
Asp
Phe
Leu
Lys
Ser
Asp
Gly
Phe
Ala
Asn
Arg
Asn
Phe
Met
Gln
Leu
701-750 4oo8
Ile
His
Asp
Asp
Ser
Leu
Thr
Phe
Lys
Glu
Asp
Ile
Gln
Lys
Ala
Gln
Val
Ser
Gly
Gln
Gly
Asp
Ser
Leu
His
Glu
His
Ile
Ala
Asn
Leu
Ala
Gly
Ser
Pro
Ala
Ile
Lys
Lys
Gly
Ile
Leu
Gln
Thr
Val
Lys
Val
Val
Asp
Glu
5f9r
Ile
His
Asp
Asp
Ser
Leu
Thr
Phe
Lys
Glu
Asp
Ile
Gln
Lys
Ala
Gln
Val
Ser
Gly
Gln
Gly
Asp
Ser
Leu
His
Glu
His
Ile
Ala
Asn
Leu
Ala
Gly
Ser
Pro
Ala
Ile
Lys
Lys
Gly
Ile
Leu
Gln
Thr
Val
Lys
Val
Val
Asp
Glu
751-800 4oo8
Leu
Val
Lys
Val
Met
Gly
Arg
His
Lys
Pro
Glu
Asn
Ile
Val
Ile
Glu
Met
Ala
Arg
Glu
Asn
Gln
Thr
Thr
Gln
Lys
Gly
Gln
Lys
Asn
Ser
Arg
Glu
Arg
Met
Lys
Arg
Ile
Glu
Glu
Gly
Ile
Lys
Glu
Leu
Gly
Ser
Gln
Ile
Leu
5f9r
Leu
Val
Lys
Val
Met
Gly
Arg
His
Lys
Pro
Glu
Asn
Ile
Val
Ile
Glu
Met
Ala
Arg
Glu
Asn
Gln
Thr
Thr
Gln
Lys
Gly
Gln
Lys
Asn
Ser
Arg
Glu
Arg
Met
Lys
Arg
Ile
Glu
Glu
Gly
Ile
Lys
Glu
Leu
Gly
Ser
Gln
Ile
Leu
801-850 4oo8
Lys
Glu
His
Pro
Val
Glu
Asn
Thr
Gln
Leu
Gln
Asn
Glu
Lys
Leu
Tyr
Leu
Tyr
Tyr
Leu
Gln
Asn
Gly
Arg
Asp
Met
Tyr
Val
Asp
Gln
Glu
Leu
Asp
Ile
Asn
Arg
Leu
Ser
Asp
Tyr
Asp
Val
Asp
Ala
Ile
Val
Pro
Gln
Ser
Phe
5f9r
Lys
Glu
His
Pro
Val
Glu
Asn
Thr
Gln
Leu
Gln
Asn
Glu
Lys
Leu
Tyr
Leu
Tyr
Tyr
Leu
Gln
Asn
Gly
Arg
Asp
Met
Tyr
Val
Asp
Gln
Glu
Leu
Asp
Ile
Asn
Arg
Leu
Ser
Asp
Tyr
Asp
Val
Asp
His
Ile
Val
Pro
Gln
Ser
Phe
851-900 4oo8
Leu
Lys
Asp
Asp
Ser
Ile
Asp
Asn
Lys
Val
Leu
Thr
Arg
Ser
Asp
Lys
Asn
Arg
Gly
Lys
Ser
Asp
Asn
Val
Pro
Ser
Glu
Glu
Val
Val
Lys
Lys
Met
Lys
Asn
Tyr
Trp
Arg
Gln
Leu
Leu
Asn
Ala
Lys
Leu
Ile
Thr
Gln
Arg
Lys
5f9r
Leu
Lys
Asp
Asp
Ser
Ile
Asp
Asn
Lys
Val
Leu
Thr
Arg
Ser
Asp
Lys
Asn
Arg
Gly
Lys
Ser
Asp
Asn
Val
Pro
Ser
Glu
Glu
Val
Val
Lys
Lys
Met
Lys
Asn
Tyr
Trp
Arg
Gln
Leu
Leu
Asn
Ala
Lys
Leu
Ile
Thr
Gln
Arg
Lys
901-950 4oo8
Phe
Asp
Asn
Leu
Thr
Lys
Ala
Glu
Arg
Gly
Gly
Leu
Ser
Glu
Leu
Asp
Lys
Ala
Gly
Phe
Ile
Lys
Arg
Gln
Leu
Val
Glu
Thr
Arg
Gln
Ile
Thr
Lys
His
Val
Ala
Gln
Ile
Leu
Asp
Ser
Arg
Met
Asn
Thr
Lys
Tyr
Asp
Glu
Asn
5f9r
Phe
Asp
Asn
Leu
Thr
Lys
Ala
Glu
Arg
Gly
Gly
Leu
Ser
Glu
Leu
Asp
Lys
Ala
Gly
Phe
Ile
Lys
Arg
Gln
Leu
Val
Glu
Thr
Arg
Gln
Ile
Thr
Lys
His
Val
Ala
Gln
Ile
Leu
Asp
Ser
Arg
Met
Asn
Thr
Lys
Tyr
Asp
Glu
Asn
951-1000 4oo8
Asp
Lys
Leu
Ile
Arg
Glu
Val
Lys
Val
Ile
Thr
Leu
Lys
Ser
Lys
Leu
Val
Ser
Asp
Phe
Arg
Lys
Asp
Phe
Gln
Phe
Tyr
Lys
Val
Arg
Glu
Ile
Asn
Asn
Tyr
His
His
Ala
His
Asp
Ala
Tyr
Leu
Asn
Ala
Val
Val
Gly
Thr
Ala
5f9r
Asp
Lys
Leu
Ile
Arg
Glu
Val
Lys
Val
Ile
Thr
Leu
Lys
Ser
Lys
Leu
Val
Ser
Asp
Phe
Arg
Lys
Asp
Phe
Gln
Phe
Tyr
Lys
Val
Arg
Glu
Ile
Asn
Asn
Tyr
His
His
Ala
His
Asp
Ala
Tyr
Leu
Asn
Ala
Val
Val
Gly
Thr
Ala
1001-1050 4oo8
Leu
Ile
Lys
Lys
Tyr
Pro
Lys
Leu
Glu
Ser
Glu
Phe
Val
Tyr
Gly
Asp
Tyr
Lys
Val
Tyr
Asp
Val
Arg
Lys
Met
Ile
Ala
Lys
Ser
Glu
Gln
Glu
Ile
Gly
Lys
Ala
Thr
Ala
Lys
Tyr
Phe
Phe
Tyr
Ser
Asn
Ile
Met
Asn
Phe
Phe
5f9r
Leu
Ile
Lys
Lys
Tyr
Pro
Lys
Leu
Glu
Ser
Glu
Phe
Val
Tyr
Gly
Asp
Tyr
Lys
Val
Tyr
Asp
Val
Arg
Lys
Met
Ile
Ala
Lys
Ser
Glu
Gln
Glu
Ile
Gly
Lys
Ala
Thr
Ala
Lys
Tyr
Phe
Phe
Tyr
Ser
Asn
Ile
Met
Asn
Phe
Phe
1051-1100 4oo8
Lys
Thr
Glu
Ile
Thr
Leu
Ala
Asn
Gly
Glu
Ile
Arg
Lys
Arg
Pro
Leu
Ile
Glu
Thr
Asn
Gly
Glu
Thr
Gly
Glu
Ile
Val
Trp
Asp
Lys
Gly
Arg
Asp
Phe
Ala
Thr
Val
Arg
Lys
Val
Leu
Ser
Met
Pro
Gln
Val
Asn
Ile
Val
Lys
5f9r
Lys
Thr
Glu
Ile
Thr
Leu
Ala
Asn
Gly
Glu
Ile
Arg
Lys
Arg
Pro
Leu
Ile
Glu
Thr
Asn
Gly
Glu
Thr
Gly
Glu
Ile
Val
Trp
Asp
Lys
Gly
Arg
Asp
Phe
Ala
Thr
Val
Arg
Lys
Val
Leu
Ser
Met
Pro
Gln
Val
Asn
Ile
Val
Lys
1101-1150 4oo8
Lys
Thr
Glu
Val
Gln
Thr
Gly
Gly
Phe
Ser
Lys
Glu
Ser
Ile
Leu
Pro
Lys
Arg
Asn
Ser
Asp
Lys
Leu
Ile
Ala
Arg
Lys
Lys
Asp
Trp
Asp
Pro
Lys
Lys
Tyr
Gly
Gly
Phe
Asp
Ser
Pro
Thr
Val
Ala
Tyr
Ser
Val
Leu
Val
Val
5f9r
Lys
Thr
Glu
Val
Gln
Thr
Gly
Gly
Phe
Ser
Lys
Glu
Ser
Ile
Leu
Pro
Lys
Arg
Asn
Ser
Asp
Lys
Leu
Ile
Ala
Arg
Lys
Lys
Asp
Trp
Asp
Pro
Lys
Lys
Tyr
Gly
Gly
Phe
Asp
Ser
Pro
Thr
Val
Ala
Tyr
Ser
Val
Leu
Val
Val
1151-1200 4oo8
Ala
Lys
Val
Glu
Lys
Gly
Lys
Ser
Lys
Lys
Leu
Lys
Ser
Val
Lys
Glu
Leu
Leu
Gly
Ile
Thr
Ile
Met
Glu
Arg
Ser
Ser
Phe
Glu
Lys
Asn
Pro
Ile
Asp
Phe
Leu
Glu
Ala
Lys
Gly
Tyr
Lys
Glu
Val
Lys
Lys
Asp
Leu
Ile
Ile
5f9r
Ala
Lys
Val
Glu
Lys
Gly
Lys
Ser
Lys
Lys
Leu
Lys
Ser
Val
Lys
Glu
Leu
Leu
Gly
Ile
Thr
Ile
Met
Glu
Arg
Ser
Ser
Phe
Glu
Lys
Asn
Pro
Ile
Asp
Phe
Leu
Glu
Ala
Lys
Gly
Tyr
Lys
Glu
Val
Lys
Lys
Asp
Leu
Ile
Ile
1201-1250 4oo8
Lys
Leu
Pro
Lys
Tyr
Ser
Leu
Phe
Glu
Leu
Glu
Asn
Gly
Arg
Lys
Arg
Met
Leu
Ala
Ser
Ala
Gly
Glu
Leu
Gln
Lys
Gly
Asn
Glu
Leu
Ala
Leu
Pro
Ser
Lys
Tyr
Val
Asn
Phe
Leu
Tyr
Leu
Ala
Ser
His
Tyr
Glu
Lys
Leu
Lys
5f9r
Lys
Leu
Pro
Lys
Tyr
Ser
Leu
Phe
Glu
Leu
Glu
Asn
Gly
Arg
Lys
Arg
Met
Leu
Ala
Ser
Ala
Gly
Glu
Leu
Gln
Lys
Gly
Asn
Glu
Leu
Ala
Leu
Pro
Ser
Lys
Tyr
Val
Asn
Phe
Leu
Tyr
Leu
Ala
Ser
His
Tyr
Glu
Lys
Leu
Lys
1251-1300 4oo8
Gly
Ser
Pro
Glu
Asp
Asn
Glu
Gln
Lys
Gln
Leu
Phe
Val
Glu
Gln
His
Lys
His
Tyr
Leu
Asp
Glu
Ile
Ile
Glu
Gln
Ile
Ser
Glu
Phe
Ser
Lys
Arg
Val
Ile
Leu
Ala
Asp
Ala
Asn
Leu
Asp
Lys
Val
Leu
Ser
Ala
Tyr
Asn
Lys
5f9r
Gly
Ser
Pro
Glu
Asp
Asn
Glu
Gln
Lys
Gln
Leu
Phe
Val
Glu
Gln
His
Lys
His
Tyr
Leu
Asp
Glu
Ile
Ile
Glu
Gln
Ile
Ser
Glu
Phe
Ser
Lys
Arg
Val
Ile
Leu
Ala
Asp
Ala
Asn
Leu
Asp
Lys
Val
Leu
Ser
Ala
Tyr
Asn
Lys
1301-1350 4oo8
His
Arg
Asp
Lys
Pro
Ile
Arg
Glu
Gln
Ala
Glu
Asn
Ile
Ile
His
Leu
Phe
Thr
Leu
Thr
Asn
Leu
Gly
Ala
Pro
Ala
Ala
Phe
Lys
Tyr
Phe
Asp
Thr
Thr
Ile
Asp
Arg
Lys
Arg
Tyr
Thr
Ser
Thr
Lys
Glu
Val
Leu
Asp
Ala
Thr
5f9r
His
Arg
Asp
Lys
Pro
Ile
Arg
Glu
Gln
Ala
Glu
Asn
Ile
Ile
His
Leu
Phe
Thr
Leu
Thr
Asn
Leu
Gly
Ala
Pro
Ala
Ala
Phe
Lys
Tyr
Phe
Asp
Thr
Thr
Ile
Asp
Arg
Lys
Arg
Tyr
Thr
Ser
Thr
Lys
Glu
Val
Leu
Asp
Ala
Thr
1351- 4oo8
Leu
Ile
His
Gln
Ser
Ile
Thr
Gly
Leu
Tyr
Glu
Thr
Arg
Ile
Asp
Leu
Ser
Gln
Leu
Gly
Gly
Asp
5f9r
Leu
Ile
His
Gln
Ser
Ile
Thr
Gly
Leu
Tyr
Glu
Thr
Arg
Ile
Asp
Leu
Ser
Gln
Leu
Gly
Gly
Asp
画像クリックで拡大
Cas9タンパク質4oo8(B鎖)と5f9r(A鎖)のアミノ酸配列の異同(FASTA形式データから作成;PDB形式データとの違いに注)
上表の四角枠部分を中心にした拡大図
【参考】Cas9タンパク質のアミノ酸配列比較(FASTA形式データから作成);5b2o(TGG PAM),5b2p(TGA PAM),5b2q(TGG PAM)の各A鎖の比較;1301番残基以降(1371番以前は共通)
1301-1350 5b2o
Lys
Pro
Ile
Ser
Ile
Asp
Ile
Gln
Ile
Ser
Thr
Leu
Glu
Glu
Leu
Arg
Asn
Ile
Leu
Thr
Thr
Asn
Asn
Ile
Ala
Ala
Thr
Ala
Glu
Tyr
Tyr
Tyr
Ile
Asn
Leu
Lys
Thr
Gln
Lys
Leu
His
Glu
Tyr
Tyr
Ile
Glu
Asn
Tyr
Asn
Thr
5b2p
Lys
Pro
Ile
Ser
Ile
Asp
Ile
Gln
Ile
Ser
Thr
Leu
Glu
Glu
Leu
Arg
Asn
Ile
Leu
Thr
Thr
Asn
Asn
Ile
Ala
Ala
Thr
Ala
Glu
Tyr
Tyr
Tyr
Ile
Asn
Leu
Lys
Thr
Gln
Lys
Leu
His
Glu
Tyr
Tyr
Ile
Glu
Asn
Tyr
Asn
Thr
5b2q
Lys
Pro
Ile
Ser
Ile
Asp
Ile
Gln
Ile
Ser
Thr
Leu
Glu
Glu
Leu
Arg
Asn
Ile
Leu
Thr
Thr
Asn
Asn
Ile
Ala
Ala
Thr
Ala
Glu
Tyr
Tyr
Tyr
Ile
Asn
Leu
Lys
Thr
Gln
Lys
Leu
His
Glu
Tyr
Tyr
Ile
Glu
Asn
Tyr
Asn
Thr
1351-1400 5b2o
Ala
Leu
Gly
Tyr
Lys
Lys
Tyr
Ser
Lys
Glu
Met
Glu
Phe
Leu
Arg
Ser
Leu
Ala
Tyr
Arg
Ser
Glu
Arg
Val
Lys
Ile
Lys
Ser
Ile
Asp
Asp
Val
Lys
Gln
Val
Leu
Asp
Lys
Asp
Ser
Asn
Phe
Ile
Ile
Gly
Lys
Ile
Thr
Leu
Pro
5b2p
Ala
Leu
Gly
Tyr
Lys
Lys
Tyr
Ser
Lys
Glu
Met
Glu
Phe
Leu
Arg
Ser
Leu
Ala
Tyr
Arg
Ser
Glu
Arg
Val
Lys
Ile
Lys
Ser
Ile
Asp
Asp
Val
Lys
Gln
Val
Leu
Asp
Lys
Asp
Ser
Asn
Phe
Ile
Ile
Gly
Lys
Ile
Thr
Leu
Pro
5b2q
Ala
Leu
Gly
Tyr
Lys
Lys
Tyr
Ser
Lys
Glu
Met
Glu
Phe
Leu
Arg
Ser
Leu
Ala
Tyr
Arg
Ser
Arg
Arg
Val
Lys
Ile
Lys
Ser
Ile
Asp
Asp
Val
Lys
Gln
Val
Leu
Asp
Lys
Asp
Ser
Asn
Phe
Ile
Ile
Gly
Lys
Ile
Thr
Leu
Pro
1401-1450 5b2o
Phe
Lys
Lys
Glu
Trp
Gln
Arg
Leu
Tyr
Arg
Glu
Trp
Gln
Asn
Thr
Thr
Ile
Lys
Asp
Asp
Tyr
Glu
Phe
Leu
Lys
Ser
Phe
Phe
Asn
Val
Lys
Ser
Ile
Thr
Lys
Leu
His
Lys
Lys
Val
Arg
Lys
Asp
Phe
Ser
Leu
Pro
Ile
Ser
Thr
5b2p
Phe
Lys
Lys
Glu
Trp
Gln
Arg
Leu
Tyr
Arg
Glu
Trp
Gln
Asn
Thr
Thr
Ile
Lys
Asp
Asp
Tyr
Glu
Phe
Leu
Lys
Ser
Phe
Phe
Asn
Val
Lys
Ser
Ile
Thr
Lys
Leu
His
Lys
Lys
Val
Arg
Lys
Asp
Phe
Ser
Leu
Pro
Ile
Ser
Thr
5b2q
Phe
Lys
Lys
Glu
Trp
Gln
Arg
Leu
Tyr
Arg
Glu
Trp
Gln
Asn
Thr
Thr
Ile
Lys
Asp
Asp
Tyr
Glu
Phe
Leu
Lys
Ser
Phe
Phe
Asn
Val
Lys
Ser
Ile
Thr
Lys
Leu
His
Lys
Lys
Val
Arg
Lys
Asp
Phe
Ser
Leu
Pro
Ile
Ser
Thr
1451-1500 5b2o
Asn
Glu
Gly
Lys
Phe
Leu
Val
Lys
Arg
Lys
Thr
Trp
Asp
Asn
Asn
Phe
Ile
Tyr
Gln
Ile
Leu
Asn
Asp
Ser
Asp
Ser
Arg
Ala
Asp
Gly
Thr
Lys
Pro
Phe
Ile
Pro
Ala
Phe
Asp
Ile
Ser
Lys
Asn
Glu
Ile
Val
Glu
Ala
Ile
Ile
5b2p
Asn
Glu
Gly
Lys
Phe
Leu
Val
Lys
Arg
Lys
Thr
Trp
Asp
Asn
Asn
Phe
Ile
Tyr
Gln
Ile
Leu
Asn
Asp
Ser
Asp
Ser
Arg
Ala
Asp
Gly
Thr
Lys
Pro
Phe
Ile
Pro
Ala
Phe
Asp
Ile
Ser
Lys
Asn
Glu
Ile
Val
Glu
Ala
Ile
Ile
5b2q
Asn
His
Gly
Lys
Phe
Leu
Val
Lys
Arg
Lys
Thr
Trp
Asp
Asn
Asn
Phe
Ile
Tyr
Gln
Ile
Leu
Asn
Asp
Ser
Asp
Ser
Arg
Ala
Asp
Gly
Thr
Lys
Pro
Phe
Ile
Pro
Ala
Phe
Asp
Ile
Ser
Lys
Asn
Glu
Ile
Val
Glu
Ala
Ile
Ile
1501-1550 5b2o
Asp
Ser
Phe
Thr
Ser
Lys
Asn
Ile
Phe
Trp
Leu
Pro
Lys
Asn
Ile
Glu
Leu
Gln
Lys
Val
Asp
Asn
Lys
Asn
Ile
Phe
Ala
Ile
Asp
Thr
Ser
Lys
Trp
Phe
Glu
Val
Glu
Thr
Pro
Ser
Asp
Leu
Arg
Asp
Ile
Gly
Ile
Ala
Thr
Ile
5b2p
Asp
Ser
Phe
Thr
Ser
Lys
Asn
Ile
Phe
Trp
Leu
Pro
Lys
Asn
Ile
Glu
Leu
Gln
Lys
Val
Asp
Asn
Lys
Asn
Ile
Phe
Ala
Ile
Asp
Thr
Ser
Lys
Trp
Phe
Glu
Val
Glu
Thr
Pro
Ser
Asp
Leu
Arg
Asp
Ile
Gly
Ile
Ala
Thr
Ile
5b2q
Asp
Ser
Phe
Thr
Ser
Lys
Asn
Ile
Phe
Trp
Leu
Pro
Lys
Asn
Ile
Glu
Leu
Gln
Lys
Val
Asp
Asn
Lys
Asn
Ile
Phe
Ala
Ile
Asp
Thr
Ser
Lys
Trp
Phe
Glu
Val
Glu
Thr
Pro
Ser
Asp
Leu
Arg
Asp
Ile
Gly
Ile
Ala
Thr
Ile
1551-1600 5b2o
Gln
Tyr
Lys
Ile
Asp
Asn
Asn
Ser
Arg
Pro
Lys
Val
Arg
Val
Lys
Leu
Asp
Tyr
Val
Ile
Asp
Asp
Asp
Ser
Lys
Ile
Asn
Tyr
Phe
Met
Asn
His
Ser
Leu
Leu
Lys
Ser
Arg
Tyr
Pro
Asp
Lys
Val
Leu
Glu
Ile
Leu
Lys
Gln
Ser
5b2p
Gln
Tyr
Lys
Ile
Asp
Asn
Asn
Ser
Arg
Pro
Lys
Val
Arg
Val
Lys
Leu
Asp
Tyr
Val
Ile
Asp
Asp
Asp
Ser
Lys
Ile
Asn
Tyr
Phe
Met
Asn
His
Ser
Leu
Leu
Lys
Ser
Arg
Tyr
Pro
Asp
Lys
Val
Leu
Glu
Ile
Leu
Lys
Gln
Ser
5b2q
Gln
Tyr
Lys
Ile
Asp
Asn
Asn
Ser
Ala
Pro
Lys
Val
Arg
Val
Lys
Leu
Asp
Tyr
Val
Ile
Asp
Asp
Asp
Ser
Lys
Ile
Asn
Tyr
Phe
Met
Asn
His
Ser
Leu
Leu
Lys
Ser
Arg
Tyr
Pro
Asp
Lys
Val
Leu
Glu
Ile
Leu
Lys
Gln
Ser
1601- 5b2o
Thr
Ile
Ile
Glu
Phe
Glu
Ser
Ser
Gly
Phe
Asn
Lys
Thr
Ile
Lys
Glu
Met
Leu
Gly
Met
Lys
Leu
Ala
Gly
Ile
Tyr
Asn
Glu
Thr
Ser
Asn
Asn
5b2p
Thr
Ile
Ile
Glu
Phe
Glu
Ser
Ser
Gly
Phe
Asn
Lys
Thr
Ile
Lys
Glu
Met
Leu
Gly
Met
Lys
Leu
Ala
Gly
Ile
Tyr
Asn
Glu
Thr
Ser
Asn
Asn
5b2q
Thr
Ile
Ile
Glu
Phe
Glu
Ser
Ser
Gly
Phe
Asn
Lys
Thr
Ile
Lys
Glu
Met
Leu
Gly
Met
Lys
Leu
Ala
Gly
Ile
Tyr
Asn
Glu
Thr
Ser
Asn
Asn
画像クリックで拡大
上表の縮小画像
◎5b2o(TGG PAM)・5b2p(TGA
PAM)・5b2q(TGG PAM),5b2r(TGA
PAM)・5b2s(TGAG
PAM)・5b2t(TGCG
PAM),および5fw1(TGAG
PAM)・5fw2(TGAG
PAM)・5fw3(TGCG
PAM)のsgRNAおよび標的DNAの塩基配列
※5b2o・5b2p・5b2qはCell(2016/02/11)(または日本医療研究開発機構プレスリリース),5b2r・5b2s・5b2tはMolecular Cell(2016/03/17)を参照
※5fw1・5fw2・5fw3はMolecular Cell(2016/03/17)参照
※5b43はCRISPR-Cas9でなくCRISPR-Cpf1のデータ例;JST(2016/04/22)参照
5B2O: GGGAAAUUAGGUGCGCUGGGGGUUUCAGUUGCGCCGAAAGGCGCUCUGUAAUCAUUUAAAAGUAUUUUGAACGGACCUCUGUUUGACACGUCUG
5B2P: GGGAAAUUAGGUGCGCUGGGGGUUUCAGUUGCGCCGAAAGGCGCUCUGUAAUCAUUAAAAAGUAUUUUGAACGGACCUCUGUUUGACACGUCUG
5B2Q: GGGAAAUUAGGUGCGCUGGGGGUUUCAGUUGCGCCGAAAGGCGCUCUGUAAUCAUUUAAAAGUAUUUUGAACGGACCUCUGUUUGACACGUCUG
5B2R: GGAAAUUAGGUGCGCUUGGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUG
5B2S: GGAAAUUAGGUGCGCUUGGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUG
5B2T: GGAAAUUAGGUGCGCUUGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGU
G
5FW1: GGAUAACUCAAUUUGUAAAAAAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCUUAUCAACUUGAAAAAGUG
5FW2: GGAUAACUCAAUUUGUAAAAAAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCUUAUCAACUUGAAAAAGUG
5FW3: GGAUAACUCAAUUUGUAAAAAAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCUUAUCAACUUGAAAAAGUG
5B43: AAUUUCUACUCUUGUAGAUGGAAAUUAGGUGCGCUUGGCAACC …CRISPR-Cpf1
5B2O: CCGATACCACCCCAGCGCACCTAATTTCCC
5B2P: CCGATATCACCCCAGCGCACCTAATTTCCC
5B2Q: CCGATACCACCCCAGCGCACCTAATTTCCC
5B2R: CAATCTCAGCCAAGCGCACCTAATTTCC
5B2S: CAATCTCAGCCAAGCGCACCTAATTTCC
5B2T: CAATCGCAGCCAAGCGCACCTAATTTCC
5FW1: CAATCTCATTTTTTACAAATTGAGTTAT
5FW2: CAATCTCATTTTTTACAAATTGAGTTAT
5FW3: CAACCGCATTTTTTACAAATTGAGTTAT
5B43: GGTTGCCAAGCGCACCTAATTTCCTAAAGGACTG …CRISPR-Cpf1
5B2O: TGGTATCGG
5B2P: TGATATCGG
5B2Q: TGGTATCGG
5B2R: TGAGATTG
5B2S: TGAGATTG
5B2T: TGCGATTG
5FW1: AAAATGAGATTG
5FW2: AAAATGAGATTG
5FW3: AAAATGCGATTG
5B43: CAGTCCTTTA …CRISPR-Cpf1
5b2p(TGA PAM)および5b2q(TGG PAM)のChain CとD(大きな球表示が塩基)の接合部分
5b43
※Chain B-Dの塩基配列は上掲(CRISPR-Cas9と比較)
●参考資料・ニュース
CRISPR: Gene editing and beyond - YouTube
Genome Editing with CRISPR-Cas9 - YouTube
Genetic Engineering Will Change Everything Forever - CRISPR - YouTube