Toll様受容体のユニークな馬蹄形構造の維持にはロイシンリッチリピート(LRR)が重要な役割を担っていると言われます。このページではToll様受容体以外の特徴的な構造を持つタンパク質との比較をしてみます。
●Toll様受容体(TLR4)
$ “BCAA球表示(Leu Ile Val)”は以下のアミノ酸配列表と同色で50%球表示になります。表示変更後は3種のアミノ酸残基が選択された状態になっていますので,球サイズ変更やアミノ色指定(この場合は全アミノ酸が対応色に)などが可能です(以下同)。
●アミノ色表示の凡例
ASP GLU CYS MET LYS ARG SER THR PHE TYR ASN GLN GLY LEU VAL ILE ALA TRP HIS PRO
●酸性・中性〈芳香族〉・塩基性アミノ酸区別表示の凡例
ASP GLU GLY ALA VAL LEU ILE CYS SER THR ASN GLN PRO MET PHE TYR TRP LYS ARG HIS
●極性〈酸性・塩基性〉・非極性(疎水性)アミノ酸区別
SER THR TYR CYS ASN GLN ASP GLU LYS ARG HIS GLY ALA VAL LEU ILE PHE PRO MET TRP
●疎水性インデックス順
ARG LYS ASN ASP GLN GLU HIS PRO TYR TRP SER THR GLY ALA MET CYS PHE LEU VAL ILE
●有機概念図I/O値順(特性基 R)
ASN SER ASP GLN GLU THR ARG HIS GLY LYS TYR TRP CYS MET PRO PHE ALA VAL LEU ILE
●等電点順
ASP GLU CYS ASN PHE GLN TYR SER MET TRP VAL GLY LEU ALA ILE THR PRO HIS LYS ARG
アミノ酸および特性基の親水性・疎水性 | Log Pをポケットに!
3FXI A鎖(TLR4)のアミノ酸配列
Ile = 25
Glu
Pro
Cys
Val
Glu
Val
Val
Pro
Asn
Ile
Thr
Tyr
Gln
Cys
Met
Glu
Leu
Asn
Phe
Tyr
Lys
Ile
Pro
Asp
Asn
Leu
Pro
Phe
Ser
Thr
Lys
Asn
Leu
Asp
Leu
Ser
Phe
Asn
Pro
Leu
Arg
His
Leu
Gly
Ser
Tyr
Ser
Phe
Phe
Ser
Phe
Pro
Glu
Leu
Gln
Val
Leu
Asp
Leu
Ser
Arg
Cys
Glu
Ile
Gln
Thr
Ile
Glu
Asp
Gly
Ala
Tyr
Gln
Ser
Leu
Ser
His
Leu
Ser
Thr
Leu
Ile
Leu
Thr
Gly
Asn
Pro
Ile
Gln
Ser
Leu
Ala
Leu
Gly
Ala
Phe
Ser
Gly
Leu
Ser
Ser
Leu
Gln
Lys
Leu
Val
Ala
Val
Glu
Thr
Asn
Leu
Ala
Ser
Leu
Glu
Asn
Phe
Pro
Ile
Gly
His
Leu
Lys
Thr
Leu
Lys
Glu
Leu
Asn
Val
Ala
His
Asn
Leu
Ile
Gln
Ser
Phe
Lys
Leu
Pro
Glu
Tyr
Phe
Ser
Asn
Leu
Thr
Asn
Leu
Glu
His
Leu
Asp
Leu
Ser
Ser
Asn
Lys
Ile
Gln
Ser
Ile
Tyr
Cys
Thr
Asp
Leu
Arg
Val
Leu
His
Gln
Met
Pro
Leu
Leu
Asn
Leu
Ser
Leu
Asp
Leu
Ser
Leu
Asn
Pro
Met
Asn
Phe
Ile
Gln
Pro
Gly
Ala
Phe
Lys
Glu
Ile
Arg
Leu
His
Lys
Leu
Thr
Leu
Arg
Asn
Asn
Phe
Asp
Ser
Leu
Asn
Val
Met
Lys
Thr
Cys
Ile
Gln
Gly
Leu
Ala
Gly
Leu
Glu
Val
His
Arg
Leu
Val
Leu
Gly
Glu
Phe
Arg
Asn
Glu
Gly
Asn
Leu
Glu
Lys
Phe
Asp
Lys
Ser
Ala
Leu
Glu
Gly
Leu
Cys
Asn
Leu
Thr
Ile
Glu
Glu
Phe
Arg
Leu
Ala
Tyr
Leu
Asp
Tyr
Tyr
Leu
Asp
Asp
Ile
Ile
Asp
Leu
Phe
Asn
Cys
Leu
Thr
Asn
Val
Ser
Ser
Phe
Ser
Leu
Val
Ser
Val
Thr
Ile
Glu
Arg
Val
Lys
Asp
Phe
Ser
Tyr
Asn
Phe
Gly
Trp
Gln
His
Leu
Glu
Leu
Val
Asn
Cys
Lys
Phe
Gly
Gln
Phe
Pro
Thr
Leu
Lys
Leu
Lys
Ser
Leu
Lys
Arg
Leu
Thr
Phe
Thr
Ser
Asn
Lys
Gly
Gly
Asn
Ala
Phe
Ser
Glu
Val
Asp
Leu
Pro
Ser
Leu
Glu
Phe
Leu
Asp
Leu
Ser
Arg
Asn
Gly
Leu
Ser
Phe
Lys
Gly
Cys
Cys
Ser
Gln
Ser
Asp
Phe
Gly
Thr
Thr
Ser
Leu
Lys
Tyr
Leu
Asp
Leu
Ser
Phe
Asn
Gly
Val
Ile
Thr
Met
Ser
Ser
Asn
Phe
Leu
Gly
Leu
Glu
Gln
Leu
Glu
His
Leu
Asp
Phe
Gln
His
Ser
Asn
Leu
Lys
Gln
Met
Ser
Glu
Phe
Ser
Val
Phe
Leu
Ser
Leu
Arg
Asn
Leu
Ile
Tyr
Leu
Asp
Ile
Ser
His
Thr
His
Thr
Arg
Val
Ala
Phe
Asn
Gly
Ile
Phe
Asn
Gly
Leu
Ser
Ser
Leu
Glu
Val
Leu
Lys
Met
Ala
Gly
Asn
Ser
Phe
Gln
Glu
Asn
Phe
Leu
Pro
Asp
Ile
Phe
Thr
Glu
Leu
Arg
Asn
Leu
Thr
Phe
Leu
Asp
Leu
Ser
Gln
Cys
Gln
Leu
Glu
Gln
Leu
Ser
Pro
Thr
Ala
Phe
Asn
Ser
Leu
Ser
Ser
Leu
Gln
Val
Leu
Asn
Met
Ser
His
Asn
Asn
Phe
Phe
Ser
Leu
Asp
Thr
Phe
Pro
Tyr
Lys
Cys
Leu
Asn
Ser
Leu
Gln
Val
Leu
Asp
Tyr
Ser
Leu
Asn
His
Ile
Met
Thr
Ser
Lys
Lys
Gln
Glu
Leu
Gln
His
Phe
Pro
Ser
Ser
Leu
Ala
Phe
Leu
Asn
Leu
Thr
Gln
Asn
Asp
Phe
Ala
Cys
Thr
Cys
Glu
His
Gln
Ser
Phe
Leu
Gln
Trp
Ile
Lys
Asp
Gln
Arg
Gln
Leu
Leu
Val
Glu
Val
Glu
Arg
Met
Glu
Cys
Ala
Thr
Pro
Ser
Asp
Lys
Gln
Gly
Met
Pro
Val
Leu
Ser
Leu
Asn
Ile
Thr
Cys
Gln
Met
Asn
Lys
Val = 26
Leu = 105(17.4%)
BCAA = 156(25.8%)
Cys = 16
Total = 605
●ロイシンジッパー → 科学未来館展示のタンパク質
1A02 F鎖のアミノ酸配列
Ile = 2
Met
Lys
Arg
Arg
Ile
Arg
Arg
Glu
Arg
Asn
Lys
Met
Ala
Ala
Ala
Lys
Ser
Arg
Asn
Arg
Arg
Arg
Glu
Leu
Thr
Asp
Thr
Leu
Gln
Ala
Glu
Thr
Asp
Gln
Leu
Glu
Asp
Glu
Lys
Ser
Ala
Leu
Gln
Thr
Glu
Ile
Ala
Asn
Leu
Leu
Lys
Glu
Lys
Glu
Lys
Leu
Val = 0
Leu = 7(12.5%)
BCAA = 9(16.1%)
Cys = 0
Total = 56
●ヘモグロビン → ヘモグロビンとヘモグロビンS
1HHO A鎖のアミノ酸配列
Ile = 0
Val
Leu
Ser
Pro
Ala
Asp
Lys
Thr
Asn
Val
Lys
Ala
Ala
Trp
Gly
Lys
Val
Gly
Ala
His
Ala
Gly
Glu
Tyr
Gly
Ala
Glu
Ala
Leu
Glu
Arg
Met
Phe
Leu
Ser
Phe
Pro
Thr
Thr
Lys
Thr
Tyr
Phe
Pro
His
Phe
Asp
Leu
Ser
His
Gly
Ser
Ala
Gln
Val
Lys
Gly
His
Gly
Lys
Lys
Val
Ala
Asp
Ala
Leu
Thr
Asn
Ala
Val
Ala
His
Val
Asp
Asp
Met
Pro
Asn
Ala
Leu
Ser
Ala
Leu
Ser
Asp
Leu
His
Ala
His
Lys
Leu
Arg
Val
Asp
Pro
Val
Asn
Phe
Lys
Leu
Leu
Ser
His
Cys
Leu
Leu
Val
Thr
Leu
Ala
Ala
His
Leu
Pro
Ala
Glu
Phe
Thr
Pro
Ala
Val
His
Ala
Ser
Leu
Asp
Lys
Phe
Leu
Ala
Ser
Val
Ser
Thr
Val
Leu
Thr
Ser
Lys
Tyr
Arg
Val = 13
Leu = 18(12.8%)
BCAA = 31(22.0%)
Cys = 1
Total = 141
●P450 → P450データ集メニュー
1DZ8 A鎖のアミノ酸配列
Ile = 26
Thr
Thr
Glu
Thr
Ile
Gln
Ser
Asn
Ala
Asn
Leu
Ala
Pro
Leu
Pro
Pro
His
Val
Pro
Glu
His
Leu
Val
Phe
Asp
Phe
Asp
Met
Tyr
Asn
Pro
Ser
Asn
Leu
Ser
Ala
Gly
Val
Gln
Glu
Ala
Trp
Ala
Val
Leu
Gln
Glu
Ser
Asn
Val
Pro
Asp
Leu
Val
Trp
Thr
Arg
Cys
Asn
Gly
Gly
His
Trp
Ile
Ala
Thr
Arg
Gly
Gln
Leu
Ile
Arg
Glu
Ala
Tyr
Glu
Asp
Tyr
Arg
His
Phe
Ser
Ser
Glu
Cys
Pro
Phe
Ile
Pro
Arg
Glu
Ala
Gly
Glu
Ala
Tyr
Asp
Phe
Ile
Pro
Thr
Ser
Met
Asp
Pro
Pro
Glu
Gln
Arg
Gln
Phe
Arg
Ala
Leu
Ala
Asn
Gln
Val
Val
Gly
Met
Pro
Val
Val
Asp
Lys
Leu
Glu
Asn
Arg
Ile
Gln
Glu
Leu
Ala
Cys
Ser
Leu
Ile
Glu
Ser
Leu
Arg
Pro
Gln
Gly
Gln
Cys
Asn
Phe
Thr
Glu
Asp
Tyr
Ala
Glu
Pro
Phe
Pro
Ile
Arg
Ile
Phe
Met
Leu
Leu
Ala
Gly
Leu
Pro
Glu
Glu
Asp
Ile
Pro
His
Leu
Lys
Tyr
Leu
Thr
Asp
Gln
Met
Thr
Arg
Pro
Asp
Gly
Ser
Met
Thr
Phe
Ala
Glu
Ala
Lys
Glu
Ala
Leu
Tyr
Asp
Tyr
Leu
Ile
Pro
Ile
Ile
Glu
Gln
Arg
Arg
Gln
Lys
Pro
Gly
Thr
Asp
Ala
Ile
Ser
Ile
Val
Ala
Asn
Gly
Gln
Val
Asn
Gly
Arg
Pro
Ile
Thr
Ser
Asp
Glu
Ala
Lys
Arg
Met
Cys
Gly
Leu
Leu
Leu
Val
Gly
Gly
Leu
Asp
Thr
Val
Val
Asn
Phe
Leu
Ser
Phe
Ser
Met
Glu
Phe
Leu
Ala
Lys
Ser
Pro
Glu
His
Arg
Gln
Glu
Leu
Ile
Gln
Arg
Pro
Glu
Arg
Ile
Pro
Ala
Ala
Cys
Glu
Glu
Leu
Leu
Arg
Arg
Phe
Ser
Leu
Val
Ala
Asp
Gly
Arg
Ile
Leu
Thr
Ser
Asp
Tyr
Glu
Phe
His
Gly
Val
Gln
Leu
Lys
Lys
Gly
Asp
Gln
Ile
Leu
Leu
Pro
Gln
Met
Leu
Ser
Gly
Leu
Asp
Glu
Arg
Glu
Asn
Ala
Cys
Pro
Met
His
Val
Asp
Phe
Ser
Arg
Gln
Lys
Val
Ser
His
Thr
Thr
Phe
Gly
His
Gly
Ser
His
Leu
Cys
Leu
Gly
Gln
His
Leu
Ala
Arg
Arg
Glu
Ile
Ile
Val
Thr
Leu
Lys
Glu
Trp
Leu
Thr
Arg
Ile
Pro
Asp
Phe
Ser
Ile
Ala
Pro
Gly
Ala
Gln
Ile
Gln
His
Lys
Ser
Gly
Ile
Val
Ser
Gly
Val
Gln
Ala
Leu
Pro
Leu
Val
Trp
Asp
Pro
Ala
Thr
Thr
Lys
Ala
Val
Val = 24
Leu = 42(10.1%)
BCAA = 92(22.2%)
Cys = 8
Total = 414
●GFP → 緑色蛍光を発するタンパク質(GFP)
1HCJ A鎖のアミノ酸配列
Ile = 12
Met
Ser
Lys
Gly
Glu
Glu
Leu
Phe
Thr
Gly
Val
Val
Pro
Ile
Leu
Val
Glu
Leu
Asp
Gly
Asp
Val
Asn
Gly
His
Lys
Phe
Ser
Val
Ser
Gly
Glu
Gly
Glu
Gly
Asp
Ala
Thr
Tyr
Gly
Lys
Leu
Thr
Leu
Lys
Phe
Ile
Cys
Thr
Thr
Gly
Lys
Leu
Pro
Val
Pro
Trp
Pro
Thr
Leu
Val
Thr
Thr
Phe
Ser
Tyr
Gly
Val
Gln
Cys
Phe
Ser
Arg
Tyr
Pro
Asp
His
Met
Lys
Arg
His
Asp
Phe
Phe
Lys
Ser
Ala
Met
Pro
Glu
Gly
Tyr
Val
Gln
Glu
Arg
Thr
Ile
Phe
Phe
Lys
Asp
Asp
Gly
Asn
Tyr
Lys
Thr
Arg
Ala
Glu
Val
Lys
Phe
Glu
Gly
Asp
Thr
Leu
Val
Asn
Arg
Ile
Glu
Leu
Lys
Gly
Ile
Asp
Phe
Lys
Glu
Asp
Gly
Asn
Ile
Leu
Gly
His
Lys
Leu
Glu
Tyr
Asn
Tyr
Asn
Ser
His
Asn
Val
Tyr
Ile
Met
Ala
Asp
Lys
Gln
Lys
Asn
Gly
Ile
Lys
Val
Asn
Phe
Lys
Ile
Arg
His
Asn
Ile
Glu
Asp
Gly
Ser
Val
Gln
Leu
Ala
Asp
His
Tyr
Gln
Gln
Asn
Thr
Pro
Ile
Gly
Asp
Gly
Pro
Val
Leu
Leu
Pro
Asp
Asn
His
Tyr
Leu
Ser
Thr
Gln
Ser
Ala
Leu
Ser
Lys
Asp
Pro
Asn
Glu
Lys
Arg
Asp
His
Met
Val
Leu
Leu
Glu
Phe
Val
Thr
Ala
Ala
Gly
Ile
Thr
His
Gly
Met
Asp
Glu
Leu
Tyr
Lys
Val = 17
Leu = 19(7.98%)
BCAA = 48(20.2%)
Cys = 2
Total = 238
●イオンチャネル → イオンチャネルタンパク質の例
1BL8 A鎖のアミノ酸配列
Ile = 3
Ala
Leu
His
Trp
Arg
Ala
Ala
Gly
Ala
Ala
Thr
Val
Leu
Leu
Val
Ile
Val
Leu
Leu
Ala
Gly
Ser
Tyr
Leu
Ala
Val
Leu
Ala
Glu
Arg
Gly
Ala
Pro
Gly
Ala
Gln
Leu
Ile
Thr
Tyr
Pro
Arg
Ala
Leu
Trp
Trp
Ser
Val
Glu
Thr
Ala
Thr
Thr
Val
Gly
Tyr
Gly
Asp
Leu
Tyr
Pro
Val
Thr
Leu
Trp
Gly
Arg
Cys
Val
Ala
Val
Val
Val
Met
Val
Ala
Gly
Ile
Thr
Ser
Phe
Gly
Leu
Val
Thr
Ala
Ala
Leu
Ala
Thr
Trp
Phe
Val
Gly
Arg
Glu
Gln
Val = 14
Leu = 13(13.4%)
BCAA = 30(30.9%)
Cys = 1
Total = 97